Note: In windows, there is no cat command, use 'more' instead. Pipe operator still applies in windows.
A modified tutorial for Windows 7/Vista; first you need to call up strawberry perl terminal and navigate to tableviewer directory
first, create a 3x3 table (use a random seed so that this step is reproducible) > perl bin\make-table -row 3 -seed 123 -brief > samples\table-basic.txt # let's see the table > more samples\table-basic.txt lbl A B C A 262 209 168 B 28 86 45 C 58 95 69 # now parse the table > more samples\table-basic.txt | bin\parse-table > tmp.txt # now create configuration and data files > more tmp.txt | bin\make-conf -dir data # let's see what was created > dir data/ Directory of c:\circos-0.55\tools\tableviewer\data 01/24/2012 10:35 PM <DIR> . 01/24/2012 10:35 PM <DIR> .. 01/24/2012 10:35 PM 255 all.txt 01/24/2012 10:35 PM 261 cap.col.txt 01/24/2012 10:35 PM 247 cap.row.txt 01/24/2012 10:35 PM 740 cells.txt 01/24/2012 10:35 PM 255 col.txt 01/24/2012 10:35 PM 62 colors.conf 01/24/2012 10:35 PM 598 colors_percentile.conf 01/24/2012 10:35 PM 72 karyotype.txt 01/24/2012 10:35 PM 249 row.txt 01/24/2012 10:35 PM 48 scaling.conf 01/24/2012 10:35 PM 33 segmentlabel.txt 11 File(s) 2,820 bytes 2 Dir(s) 20,571,529,216 bytes free # now draw the image (circos.conf is already defined to use the data files from data/) (suppose you are still in 'tableviewer' directory > perl ..\..\bin\circos -conf etc/circos.conf -outputfile table-basic.png